man this is the weirdest problem that started out of no where. one day i put the window all the way up but when i try to shut it it hits on the top rim of the roof. I don't know if this makes sense but has anyone heard of this weird crap, i dont know if the door is crooked for no reason, or is the window going high enough to hit the roof of the car. i guess the best thing is to take it to the dealership, but its weird how problems just pop up.
that same thing happened to me, and I took it to the dealership and they said that the "track" that the window goes up and down was bent. They said it was probably caused by shuting the door by the window instead of the door. I would recomment just taking it in there... took like 30 minutes to fix. Hope this helps!